Smith DJ, Pretty JN, Etienne M, Spring N, Suggett DJ (2009). Using coral reefs to examine the threats of climate change to marine biodiversity. National Biologial Symposium (book chapter)

Hennige SJ, Suggett DJ, Warner ME, McDougall KE, Smith DJ (2009) Photobiology of Symbiodinium revisited: bio-physical and bio-optical signatures. Coral Reefs, 28(1): 179-195

Hennige SJ, Suggett DJ, Etienne M, Spring N, Smith DJ (2009) Alternative bleaching mechanisms drive long-term changes in coral community structure. Proceedings of the American Society of Limnology and Oceanography, Nice, France

Haapkylä J, Unsworth RKF, Seymour AS, Melbourne-Thomas J, Flavell M, Willis BL, Smith DJ (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87(1-2): 105-115

Haapkyla J, Seymour AS, Barneah O, Brickner I, Hennige S, Suggett DJ, Smith DJ (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156(5): 1021-1027

Eme J, Bennett WA (2009) Critical thermal tolerance polygons of tropical marine fishes from Sulawesi, Indonesia. Journal of Thermal Biology, 34(5): 220-225

Eme J, Bennett WA (2009) Acute temperature quotient responses of fishes reflect their divergent thermal habitats in the Banda Sea, Sulawesi, Indonesia. Australian Journal of Zoology, 57(5): 357-362

Clifton J (2009) Science, funding and participation: key issues for marine protected area networks and the Coral Triangle Initiative. 36(2): 91-96

Acuña Alvarez L., Exton DA, Suggett DJ, Timmis KN, McGenity TJ (2009) Characterization of marine isoprene-degrading communities. Environmental Microbiology, 11(12): 3280-3291

Priston NEC (2009) Exclosure plots as a mechanism for quantifying damage to crops by primates. International Journal of Pest Management, 55(3:) 243-249

Priston NEC, Underdown SJ (2009) A simple method for calculating the likelihood of crop damage by primates: an epidemiological approach. International Journal of Pest Management, 55(1) 51-56

Powling A (2009) The Palms of Buton, Indonesia – an Island in Wallacea. Palms, 53: 84-91

Martin TE, Blackburn GA (2009) The effectiveness of a Mesoamerican ‘paper park’ in conserving cloud forest avifauna. Biodiversity and Conservation, 18:3841-3859

Kolby J, Padgett-Flohr GE, Field R (2009) Amphibian chytrid fungus Batrachochytrium dendrobatidis in Cusuco National Park, Honduras. Diseases of Aquatic Organisms, 92: 245-251

Kolby J , Padgett-Flohr GE, Field R (2009) Reassessment of the historical timeline for Batrachochytrium dendrobatidis presence in Honduras and conservation implications for Plectrohyla dasypus. Herpetological Review, 40(3): 307-308

Kolby J (2009) Discovery of a surviving population of the montane streamside frog Craugastor milesi (Schmidt). Herpetological Review, 40(3), 282

Asher C (2009) Patterns of genetic diversity in populations of two bat species (Sturnira ludovici and Artibeus toltecus) in Cusuco National Park, Honduras. Bioscience Horizons, 2(2) 147-154

De Grave S, Anker A (2009) A new species of Periclimenes COSTA from Utila, Honduras (Crustacea, Decapoda, Pontoniinae). Annalen des Naturhistorischen Museums in Wien, 110B

Abdel-Moneim TS, Abdel-Azeem AM (2009) Operation Wallacea in Egypt 2 – Diversity of arbulscular mycorrihizal fungi in different elevation wadis in Saint Catherine Protectorate, Egypt. Assuit University Journal of Botany, 38: 55-74

Kolby J (2009) Geographic distribution: Craugastor coffeus. Herpetological Review, 40, 107.